PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=geneAttribution
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=1.30.0
pkgrel=1
pkgdesc='Identification of candidate genes associated with genetic variation'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biocgenerics
  r-genomeinfodb
  r-genomicfeatures
  r-genomicranges
  r-iranges
  r-org.hs.eg.db
  r-rtracklayer
)
optdepends=(
  r-knitr
  r-rmarkdown
  r-testthat
  r-txdb.hsapiens.ucsc.hg19.knowngene
  r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f6338b1f013c527c5dda801706ed95c3a0de94d9d64e42a1aa0a23b4434bf763')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: