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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=GenomAutomorphism
_pkgver=1.8.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Compute the automorphisms between DNA's Abelian group representations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel
r-biostrings
r-data.table
r-doparallel
r-dplyr
r-foreach
r-genomeinfodb
r-genomicranges
r-iranges
r-matrixstats
r-numbers
r-s4vectors
r-xvector
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8974d9a99cb8fb48a5433026fca4334b')
b2sums=('56325fec1bbdf3b5ad55ec09cc6e3be1e10fc34002019e4abe23e8c848ef9546798372ea8b5c95bb3d7d4a16ddf2964f2469aa574823db58550dd18c261ec8d5')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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