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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=GenomAutomorphism
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Compute the automorphisms between DNA's Abelian group representations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel
r-biostrings
r-data.table
r-doparallel
r-dplyr
r-foreach
r-genomeinfodb
r-genomicranges
r-iranges
r-matrixstats
r-numbers
r-s4vectors
r-xvector
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cb2c2c82d65e36c8f2a95afd46b8dc03')
b2sums=('611d6cfec10cb88a0701d34269a4e5e88835015b41efd5c27fffc5c4161d2d44ca7a4f2eb571dc3d22348f14828a1308ece83933d8cde3b0f03301367fa984f5')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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