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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
# Contributor: Alex Branham <branham@utexas.edu>
_pkgname=geometry
_pkgver=0.5.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Mesh Generation and Surface Tessellation"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=('GPL-3.0-or-later')
depends=(
qhull
r-linprog
r-lpsolve
r-magic
r-rcpp
)
makedepends=(
r-rcppprogress
)
checkdepends=(
r-testthat
)
optdepends=(
r-interp
r-r.matlab
r-rgl
r-spelling
r-testthat
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('72cc9f62c17a6b4d8bfde82c8657bc0d')
b2sums=('de2192a9f97ac81eddbcd9c352e7672e6372b622819decfa9c0cfee1cdeae3d20602b07c333ab2e61bda3931ef88c3e5d19889c70ae7589c90b9d3992be4ca51')
prepare() {
cd "$_pkgname/src"
# Build against system qhull
rm *_r.c *_r.h qhull_ra.h
echo -e 'PKG_LIBS = -lqhull_r\nPKG_CPPFLAGS = -I/usr/include/libqhull_r' >> Makevars
# Skip test that fails with system qhull
cd ../tests/testthat
sed -i '/"convhulln throws an error with duplicated points"/a\ \ skip("Using system qhull")' \
test-convhulln.R
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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