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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ggbio
_pkgver=1.54.0
pkgname=r-${_pkgname,,}
pkgver=1.54.0
pkgrel=1
pkgdesc='Visualization tools for genomic data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-annotationfilter
r-biobase
r-biocgenerics
r-biostrings
r-biovizbase
r-bsgenome
r-ensembldb
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggally
r-ggplot2
r-gridextra
r-gtable
r-hmisc
r-iranges
r-organismdbi
r-reshape2
r-rlang
r-rsamtools
r-rtracklayer
r-s4vectors
r-scales
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-ensdb.hsapiens.v75
r-homo.sapiens
r-knitr
r-testthat
r-tinytex
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.mmusculus.ucsc.mm9.knowngene
r-vsn
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f0079f581d92a3430113a9063180a264b7b5f9ccf3ea555f716ddb2c8c5032dd')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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