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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GUIDEseq
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=1.36.0
pkgrel=1
pkgdesc='GUIDE-seq analysis pipeline'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biostrings
r-bsgenome
r-chippeakanno
r-crisprseek
r-data.table
r-dplyr
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-hash
r-iranges
r-limma
r-matrixstats
r-multtest
r-openxlsx
r-patchwork
r-purrr
r-rio
r-rlang
r-rsamtools
r-s4vectors
r-stringr
r-tidyr
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-knitr
r-org.hs.eg.db
r-runit
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('739d3fc4d487b0a85348a35d29b5eeba88783ddc2c58b8fc8c9f5af44679f11c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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