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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=gwascat
_pkgver=2.38.0
pkgname=r-${_pkgname,,}
pkgver=2.38.0
pkgrel=1
pkgdesc='representing and modeling data in the EMBL-EBI GWAS catalog'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-annotationhub
r-biocfilecache
r-biostrings
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-readr
r-s4vectors
r-snpstats
r-variantannotation
)
optdepends=(
r-biocstyle
r-delayedarray
r-do.db
r-dplyr
r-dt
r-ggbio
r-graph
r-gviz
r-knitr
r-org.hs.eg.db
r-rbgl
r-rmarkdown
r-rsamtools
r-rtracklayer
r-snplocs.hsapiens.dbsnp144.grch37
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('aca9fb1bcbc69195933acc2d03756eaae05a2b5602198f0045c8b5b3c25609b6')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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