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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gypsum
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interface to the gypsum REST API"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-filelock
r-httr2
r-jsonlite
r-rappdirs
)
checkdepends=(
r-dbi
r-jsonvalidate
r-rsqlite
r-testthat
)
optdepends=(
r-biocstyle
r-dbi
r-digest
r-jsonvalidate
r-knitr
r-rmarkdown
r-rsqlite
r-s4vectors
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9d2f3c483225865a0bf4639fee72cd03')
b2sums=('63b87d3f4aec58210db84748b1bef1648a79a2b9c435c4e2ccaed5c20f4ebffe403141b60f8001c51ee7dc26e2afc2eafb0d6395eeed209619d30adb26e0182f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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