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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=HIBAG
_pkgver=1.42.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="HLA Genotype Imputation with Attribute Bagging"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-rcppparallel
)
checkdepends=(
r-gdsfmt
r-ggplot2
r-reshape2
r-snprelate
)
optdepends=(
r-gdsfmt
r-ggplot2
r-knitr
r-markdown
r-reshape2
r-rmarkdown
r-rsamtools
r-seqarray
r-snprelate
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('aa87ab9f1d702618bef7f7fc52ea180b')
b2sums=('c59f619b7a02c9cc32499de971a25f5f4c637d6b7a6975e6b1768be61c71a4bdca11d7e7a06de92482fb86e338ef2fcf8f6bcf4c339f970ce45d99c475d6dbf0')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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