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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=hicVennDiagram
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Venn Diagram for genomic interaction data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-complexupset
r-eulerr
r-genomeinfodb
r-genomicranges
r-ggplot2
r-htmlwidgets
r-interactionset
r-iranges
r-reshape2
r-rtracklayer
r-s4vectors
r-svglite
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-chippeakanno
r-knitr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('313574d5ead069cabeb5aafa7bbae093')
b2sums=('66953fd68d7e4bda96027956cc5e782dad88e34bf1f543a80699c6f1e6970af305050d932c68e73c740a13e49137eb2f5616d0cad9d6088baea2f486a4c2ff02')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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