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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=INSPEcT
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Modeling RNA synthesis, processing and degradation with RNA-seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-biobase
r-biocgenerics
r-biocparallel
r-deseq2
r-desolve
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-iranges
r-plgem
r-proc
r-readxl
r-rootsolve
r-rsamtools
r-rtracklayer
r-s4vectors
r-shiny
r-summarizedexperiment
r-txdb.mmusculus.ucsc.mm9.knowngene
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e0f1db4ffc949c4b4ed6d6b141d77f5e')
b2sums=('dce23be2cf4acdfe4ae6e2c0350e6241a9d85c1b6bdc85cf4ae2296a810855cbf1179396b4183b073ee091833ac11872312cbf36adb64fa05fc665a8ed2f5069')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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