blob: 47b923eee26723bfa7ff311238066d7fc1a31f69 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=iSEEhub
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="iSEE for the Bioconductor ExperimentHub"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biocmanager
r-dt
r-experimenthub
r-isee
r-rintrojs
r-s4vectors
r-shiny
r-shinydashboard
r-shinyjs
r-singlecellexperiment
r-summarizedexperiment
)
checkdepends=(
r-nullrangesdata
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-nullrangesdata
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b9a77167351499afc6b1a5aeed34e22f')
b2sums=('70c5eea1dbf75390de77214b74d519b29d309fd21f1adb15fb1e80c5775b3a998a0c2805b9ee23002456328b5e5ce304af193eaf8917be78146443e7047669bd')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|