blob: 143bc2d545d0f0a7116143da0b5f3fd5c35d7df9 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=LinTInd
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Lineage tracing by indels"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-ape
r-biocgenerics
r-biostrings
r-cowplot
r-data.tree
r-dplyr
r-ggnewscale
r-ggplot2
r-ggtree
r-iranges
r-networkd3
r-pheatmap
r-purrr
r-pwalign
r-reshape2
r-rlist
r-s4vectors
r-stringdist
r-stringr
)
optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('92c6b3c5b5aa628fbc0e66ebe3bee94e')
b2sums=('0f7bdd8845833297767e9e54fa21ffb0082b0098c5b53ce54a97e2cf0f20d58b7d69f02764cb1068b7ab0156c55e2753f44cf6be0c7cbcf2e74393083bf8d1d7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|