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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=M3Drop
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Michaelis-Menten Modelling of Dropouts in single-cell RNASeq"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-bbmle
r-gplots
r-hmisc
r-irlba
r-matrixstats
r-numderiv
r-rcolorbrewer
r-reldist
r-scater
r-statmod
)
optdepends=(
r-biobase
r-knitr
r-m3dexampledata
r-rocr
r-seurat
r-singlecellexperiment
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7cfc229dec03b03f1d866b94cd4078b2')
b2sums=('a8ade1d4d605c2f96cb80776c3d2a918c54205d75aa1eb742c03d22ec79c17cef81eaf927ee34fc66fad42a6c70bce6c01e5eb04ea6498e899a685cbb5c1408b')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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