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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=Macarron
_pkgver=1.8.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-data.table
r-delayedarray
r-dynamictreecut
r-ff
r-httr
r-logging
r-maaslin2
r-plyr
r-psych
r-rjsonio
r-summarizedexperiment
r-wgcna
r-xml2
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-markdown
r-optparse
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f978641e44a979ff706b5722f183408f')
b2sums=('d30b7ef1a7a9242d0f481be9c8a872c3a39da3353acb6febb91f9716ea8346da461eee911e092a42765d954d4489fde5bca3266d82cecbccd63c7c3f8811cd32')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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