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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
_pkgname=MACPET
_pkgver=1.15.1
pkgname=r-${_pkgname,,}
pkgver=1.15.1
pkgrel=4
pkgdesc='Model based analysis for paired-end data'
arch=('x86_64')
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
r-bh
r-bigmemory
r-biocparallel
r-biostrings
r-futile.logger
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-geoquery
r-gtools
r-interactionset
r-intervals
r-iranges
r-knitr
r-plyr
r-rbowtie
r-rcpp
r-rsamtools
r-rtracklayer
r-s4vectors
r-shortread
)
makedepends=(
patch
)
optdepends=(
r-biocstyle
r-ggplot2
r-igraph
r-reshape2
r-rmarkdown
)
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix_dbleps.patch")
sha256sums=('54ff827da7f169b43368d31b6417697ff36a20e464f5fb201de988d7dd88821c'
'2b22a1d373b9685991d80ea9177e3f085f50c229b995f4ee1be97510fd65632f')
prepare() {
cd "${srcdir}/${_pkgname}"
# fix issue with some global macro
patch -Np0 -i "${srcdir}/fix_dbleps.patch"
}
build() {
# create staging directory for installation
mkdir -p "${srcdir}/staged"
R CMD INSTALL "${_pkgname}" -l "${srcdir}/staged"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${srcdir}/staged/${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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