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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=magrene
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Motif Analysis In Gene Regulatory Networks"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-ggplot2
r-knitr
r-rmarkdown
r-sessioninfo
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e091291ec9d04bc620b1bdde157221e2')
b2sums=('c602982f644bcf44712e2d2ff4c42b5d60d9d84519b76e1d5ded8d13f407360c79a3f1035908dac72d071ad5bb0f6e9a87807846f44c8bbcfb0b8d4b8ed45596')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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