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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MAST
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Model-based Analysis of Single Cell Transcriptomics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-abind
r-biobase
r-biocgenerics
r-data.table
r-ggplot2
r-plyr
r-progress
r-reshape2
r-s4vectors
r-singlecellexperiment
r-stringr
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-blme
r-car
r-delayedarray
r-dplyr
r-gdata
r-ggally
r-gseabase
r-hdf5array
r-knitr
r-limma
r-lme4
r-nmf
r-numderiv
r-rcolorbrewer
r-rmarkdown
r-roxygen2
r-rsvd
r-scater
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
r-zinbwave
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('107286d9011330ac96cf5f6a1c0662a8')
b2sums=('a9937ea5eaafba76fa45a63bde067e0152fdcf37bd6c70709432e73705971cb9f9c4a7b16e9f07fd458deb16d4f1305246b2e2250bc2c6bb783873af93f6ad3f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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