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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=mbQTL
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A package for SNP-Taxa mGWAS analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-broom
r-dplyr
r-ggplot2
r-matrixeqtl
r-metagenomeseq
r-pheatmap
r-readxl
r-stringr
r-tidyr
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('33815ba4f7705ea49a48d3b285465156')
b2sums=('92e00dcf3738097a27a667601fa46e6e9946ef7cca71c7a7c115344c53c740d2d61a6ec3e29e40e60222d7687b8279b7a7cf8f4b6c2b8ff7c33f4bffbba89119')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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