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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MetaPhOR
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Metabolic Pathway Analysis of RNA"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-clusterprofiler
r-ggplot2
r-ggrepel
r-pheatmap
r-rcy3
r-recordlinkage
r-stringr
)
optdepends=(
"cytoscape: cytoPath()"
r-biocstyle
r-kableextra
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('1f0bda4f5f0a9ee2b6aa60ee4cd6ffab')
b2sums=('d00d5ec26352a087ef0bab3565cf1404fc977a354ad008991def06c51f478355a1b58c1ba60383c6c789e0d104e4bdf248661dba951fa904c7ad05a5dd8b0133')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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