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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MethReg
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Assessing the regulatory potential of DNA methylation regions or sites on gene transcription"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-annotationhub
r-delayedarray
r-dplyr
r-experimenthub
r-genomicranges
r-ggplot2
r-ggpubr
r-iranges
r-jaspar2024
r-openxlsx
r-plyr
r-progress
r-pscl
r-readr
r-rlang
r-rsqlite
r-s4vectors
r-sesame
r-sesamedata
r-sfsmisc
r-stringr
r-summarizedexperiment
r-tfbstools
r-tibble
r-tidyr
)
optdepends=(
r-biocfilecache
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-data.table
r-doparallel
r-dorothea
r-downloader
r-htmltools
r-jpeg
r-knitr
r-matrixstats
r-motifmatchr
r-png
r-r.utils
r-reshape2
r-rmarkdown
r-stager
r-testthat
r-viper
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d0b31767857b067628875b92dfa6fa7d')
b2sums=('e9a912a0f59b1163e51cc8b8ef53bacbb75b1dbf19999c4fbbf9d52f72d20c6756d9482b65a78ff349dc488f2db24e4cda3f172e0982d21abeb0e644d7501380')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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