blob: 9ec595a8e67420f49fda93a5f90403144ddeb54d (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=methrix
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=1.20.0
pkgrel=1
pkgdesc='Fast and efficient summarization of generic bedGraph files from Bisufite sequencing'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-bsgenome
r-data.table
r-delayedarray
r-delayedmatrixstats
r-genomicranges
r-ggplot2
r-hdf5array
r-iranges
r-matrixstats
r-rtracklayer
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-biostrings
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.mmusculus.ucsc.mm9
r-bsseq
r-dss
r-genomeinfodb
r-genomicscores
r-knitr
r-mafdb.1kgenomes.phase3.grch38
r-mafdb.1kgenomes.phase3.hs37d5
r-plotly
r-rcolorbrewer
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ee612ef6232d87fd94919151bc2b8b9c90cf82c430f62274639009a4ed383923')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|