PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=MethylSeekR
_pkgver=1.46.0
pkgname=r-${_pkgname,,}
pkgver=1.46.0
pkgrel=1
pkgdesc='Segmentation of Bis-seq data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-bsgenome
  r-geneplotter
  r-genomicranges
  r-iranges
  r-mhsmm
  r-rtracklayer
)
optdepends=(
  r-bsgenome.hsapiens.ucsc.hg18
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('59e8bd04e6bea759c6d57a69c902e995c8db7e6ed49f052a6deb825758445553')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: