blob: ea9f5a2252e2fb679aa44f12d103396be69ac2e0 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=miRSM
_pkgver=2.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Inferring miRNA sponge modules in heterogeneous data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-bibitr
r-bicare
r-biclust
r-biobase
r-clusterprofiler
r-dbscan
r-dose
r-dynamictreecut
r-energy
r-fabia
r-flashclust
r-gfa
r-gseabase
r-ibbig
r-igraph
r-isa2
r-linkcomm
r-matrixcorrelation
r-mcl
r-mclust
r-nmf
r-org.hs.eg.db
r-pma
r-ppclust
r-rcpp
r-reactomepa
r-rqubic
r-s4vd
r-sombrero
r-subspace
r-summarizedexperiment
r-wgcna
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c6816f0e2fc48787e1c66416261129b6')
b2sums=('365142fce852088ca1d15d5f58ebae8fee5b1c58b2354a9323495c16bb4be2e636fb70084cc96a2fd68c9861162992c8abb84764cb46c3e632d77d1e2aa4a198')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|