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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=miRSM
_pkgver=2.0.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Inferring miRNA sponge modules in heterogeneous data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-bibitr
r-bicare
r-biclust
r-biobase
r-clusterprofiler
r-dbscan
r-dose
r-dynamictreecut
r-energy
r-fabia
r-flashclust
r-gfa
r-gseabase
r-ibbig
r-igraph
r-isa2
r-linkcomm
r-matrixcorrelation
r-mcl
r-mclust
r-nmf
r-org.hs.eg.db
r-pma
r-ppclust
r-rcpp
r-reactomepa
r-rqubic
r-s4vd
r-sombrero
r-subspace
r-summarizedexperiment
r-wgcna
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('fbf26013db3fb184046314774563ea30')
b2sums=('76fb928c4b813f715bc1e4f10ce21bfc8e9e1d6ab2b3512feb94e7df1a982035ed197953ac94eb431c25f3a98c3fba8a1ca766e947902fe4322d9e4950722610')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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