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# system requirements: GNU make, PhISCS (optional)
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=mitoClone2
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Clonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic Mutations'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-deepsnv
r-genomicranges
r-ggplot2
r-pheatmap
r-reshape2
r-rhtslib
r-s4vectors
make
)
optdepends=(
r-biostrings
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('7e98571c02a0c3ac01f164b30009936e3e96773363946d9e0368588b9f94524b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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