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# system requirements: bedtools (>= 2.28.0), Stereogene (>= v2.22), CapR(>= 1.1.1)
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=nearBynding
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=1.14.0
pkgrel=1
pkgdesc='Discern RNA structure proximal to protein binding'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocgenerics
r-dplyr
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gplots
r-magrittr
r-matrixstats
r-plyranges
r-r.utils
r-rlang
r-rsamtools
r-rtracklayer
r-s4vectors
r-transport
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
)
optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('43de63b2be23d53b72da33a0b8a9bc40528f566841f38ae203ecf3d56eac265a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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