PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=NuPoP
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package for nucleosome positioning prediction"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
  r
)
makedepends=(
  gcc-fortran
)
optdepends=(
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f78251e4d6e4d71b766f2b87ba2d5266')
b2sums=('b1263276d40928b284b2cbd24424e917334e3f8e6f258ad434d81d8100d934eeebe68ad1c317f2fd6042c00c0dd115005e73e5dd4cbb6a417d6728d26d610780')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}