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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=omicsViewer
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive and explorative visualization of SummarizedExperssionSet or ExpressionSet using omicsViewer"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-beeswarm
r-biobase
r-curl
r-drc
r-dt
r-fastmatch
r-fgsea
r-flatxml
r-ggplot2
r-ggseqlogo
r-htmlwidgets
r-httr
r-matrixstats
r-networkd3
r-openxlsx
r-plotly
r-psych
r-rcolorbrewer
r-reshape2
r-rocr
r-rsqlite
r-s4vectors
r-shiny
r-shinybusy
r-shinycssloaders
r-shinyjs
r-shinythemes
r-shinywidgets
r-stringr
r-summarizedexperiment
r-survminer
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-unittest
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('12f1ac1893426b899e6b4c57e3ad51be')
b2sums=('90d3b495705fdc006b062764818e1ed2e3e2ede67a480be49711032dd49f0814f8ae59b08c05386dec0974831f79ef4f5afb9260527dce473734de7a2ce9ad5f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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