blob: 6f2794395e0e99621a8ca6ec4dda37716588f913 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=OrganismDbi
_pkgver=1.46.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Software to enable the smooth interfacing of different database packages"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biobase
r-biocgenerics
r-biocmanager
r-dbi
r-genomicfeatures
r-genomicranges
r-graph
r-iranges
r-rbgl
r-s4vectors
r-txdbmaker
)
optdepends=(
r-annotationhub
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg19
r-fdb.ucsc.trnas
r-homo.sapiens
r-knitr
r-mirbase.db
r-rattus.norvegicus
r-rmariadb
r-rtracklayer
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a81aa484401a0794b889eb66ba462cdc')
b2sums=('6b5a48844b244700a81531091902eaac87ec5504eb90852b84e407ec213442ef97e6e3eff5786e27ab994cb245a87e30f51d402af15755158375896af95fdf10')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|