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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=pcaExplorer
_pkgver=2.30.0
pkgname=r-${_pkgname,,}
pkgver=2.30.0
pkgrel=1
pkgdesc='Interactive Visualization of RNA-seq Data Using a Principal Components Approach'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-base64enc
r-biomart
r-deseq2
r-dt
r-genefilter
r-genomicranges
r-ggplot2
r-ggrepel
r-go.db
r-gostats
r-heatmaply
r-iranges
r-knitr
r-limma
r-nmf
r-pheatmap
r-plotly
r-plyr
r-rmarkdown
r-s4vectors
r-scales
r-shiny
r-shinyace
r-shinybs
r-shinydashboard
r-summarizedexperiment
r-threejs
r-tidyr
r-topgo
)
optdepends=(
r-airway
r-biocstyle
r-htmltools
r-markdown
r-org.hs.eg.db
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6790e499502d9bfba585e40e5acceb66c9aa48b0f82c062f69aa140efd13f4eb')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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