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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=phenoTest
_pkgver=1.54.0
pkgname=r-${_pkgname,,}
pkgver=1.54.0
pkgrel=1
pkgdesc='Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotate
r-annotationdbi
r-biobase
r-biomart
r-bma
r-category
r-ellipse
r-genefilter
r-ggplot2
r-gplots
r-gseabase
r-heatplus
r-hgu133a.db
r-hmisc
r-hopach
r-limma
r-xtable
)
optdepends=(
r-go.db
r-gseabase
r-org.ce.eg.db
r-org.dm.eg.db
r-org.hs.eg.db
r-org.mm.eg.db
r-org.rn.eg.db
r-parallel
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('19434efd91fb92c9756b5bc0d2cd72cfc1522a8bc124c169f0ace63f716c3884')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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