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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Pi
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-caret
r-dnet
r-dplyr
r-genomeinfodb
r-genomicranges
r-ggnetwork
r-ggplot2
r-ggrepel
r-glmnet
r-igraph
r-iranges
r-osfr
r-plot3d
r-purrr
r-randomforest
r-rcircos
r-readr
r-rocr
r-scales
r-suprahex
r-tibble
r-tidyr
)
optdepends=(
r-biocstyle
r-data.tree
r-doparallel
r-fgsea
r-foreach
r-ggally
r-ggbio
r-ggforce
r-ggpubr
r-gridextra
r-gviz
r-jsonlite
r-knitr
r-png
r-rcolorbrewer
r-rmarkdown
r-rtracklayer
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cb989f0e8a3a1ab90a4a319c860ef602')
b2sums=('1686a2a0049e92fbae97bd6b0fa977e3dadfebe5fd30de13d92ac879fbc8f1d1f94c770623e4ff341d522205eb768b689c645ad17982ef414ab33d0b449574fb')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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