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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=pipeFrame
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=1
pkgdesc='Pipeline framework for bioinformatics in R'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-bsgenome
r-digest
r-genomeinfodb
r-magrittr
r-rmarkdown
r-visnetwork
)
optdepends=(
r-biocmanager
r-bsgenome.hsapiens.ucsc.hg19
r-knitr
r-rtracklayer
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('95999b9e6382cd8bd71024a5c4146a7ac8379b1d26e3d9d678bf4433395e3b21')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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