PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=proBAMr
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Generating SAM file for PSMs in shotgun proteomics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r-annotationdbi
  r-biostrings
  r-genomicfeatures
  r-genomicranges
  r-iranges
  r-rtracklayer
  r-txdbmaker
)
optdepends=(
  r-biocgenerics
  r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('94d83f4f906106e1da12c9f9fdbb6485')
b2sums=('63572fc9ddb06b7e835c156c1cce4f71e07d25cf0ddf72582f1faa46c418da02fb3fb362707ebb97cdd5ae61b85f718088faff53ec86903cb834f87b2dd10e2c')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}