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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=PSMatch
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Handling and Managing Peptide Spectrum Matches"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel
r-igraph
r-mscoreutils
r-protgenerics
r-qfeatures
r-s4vectors
)
checkdepends=(
r-msdata
r-mzid
r-mzr
r-spectra
r-testthat
)
optdepends=(
r-biocstyle
r-factoextra
r-knitr
r-msdata
r-mzid
r-mzr
r-rmarkdown
r-rpx
r-spectra
r-summarizedexperiment
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cf954495b58b7d4bb5af2b1f09f7f572')
b2sums=('567505922597d28f624a25a6d4af5e74e0928e526e0bcac605253eca7db8cb9f28b70a2b55bb4ceb67b0beefd08e3ef39effb899c865829036f66d2aa27f2962')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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