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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=RAREsim
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Simulation of Rare Variant Genetic Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-nloptr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-ggplot2
r-knitr
r-markdown
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6a90455bf846efb071d61507b0f76c83')
b2sums=('0fd6c533a9ed7b8d7282b9cd5ec361b115c0e8f4e5b9c4703a3466d6d4b571cd376e9a92bd1c6f10225df878e3bc42c8fc3afce666eb3d040424c44609c35dca')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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