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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RcisTarget
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-arrow
r-aucell
r-biocgenerics
r-data.table
r-dplyr
r-genomeinfodb
r-genomicranges
r-gseabase
r-r.utils
r-s4vectors
r-summarizedexperiment
r-tibble
r-zoo
)
optdepends=(
r-biobase
r-biocparallel
r-biocstyle
r-doparallel
r-dt
r-foreach
r-gplots
r-igraph
r-knitr
r-rcistarget.hg19.motifdbs.cisbponly.500bp
r-rmarkdown
r-rtracklayer
r-testthat
r-visnetwork
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2176f88064c0b45e7b403b638d178ae9')
b2sums=('d1c8fb340025e9a6fa4db7915a65fafd4ea880483f70aa860102c42a025b1e1d58ef068c96aca46ab7bda2f55fa94477a746f71f6f00e66b54f6e02cca5ebba2')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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