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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=rexposome
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Exposome exploration and outcome data analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biobase
r-circlize
r-corrplot
r-factominer
r-ggplot2
r-ggrepel
r-ggridges
r-glmnet
r-gplots
r-gridextra
r-gtools
r-hmisc
r-imputelcmd
r-lme4
r-lsr
r-mice
r-pryr
r-reshape2
r-s4vectors
r-scales
r-scatterplot3d
r-stringr
)
optdepends=(
r-biocstyle
r-flexmix
r-formatr
r-knitr
r-mclust
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('1f4bc5e1021eaf6c77d0ce384f4a074f')
b2sums=('6b07ad1ffc6a45c20345f9e3fc828cb060a25b8e093e90dcf8955995271065a0a52b1f1cd21d8d53a8a7d840dfb5e16e0cccdb76a7c683481647dc80eebf7925')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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