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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RnBeads
_pkgver=2.22.0
pkgname=r-${_pkgname,,}
pkgver=2.22.0
pkgrel=1
pkgdesc='RnBeads'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-ff
r-fields
r-genomicranges
r-ggplot2
r-gplots
r-gridextra
r-illuminaio
r-iranges
r-limma
r-matrixstats
r-methylumi
r-plyr
r-s4vectors
)
optdepends=(
r-annotate
r-argparse
r-biomart
r-category
r-doparallel
r-foreach
r-ggbio
r-glmnet
r-gostats
r-gviz
r-hexbin
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylation450kmanifest
r-impute
r-isva
r-mclust
r-methylseekr
r-mgcv
r-minfi
r-missmethyl
r-nlme
r-org.hs.eg.db
r-org.mm.eg.db
r-org.rn.eg.db
r-plotrix
r-quadprog
r-qvalue
r-qvalue
r-rnbeads.hg19
r-rnbeads.mm9
r-rpmm
r-rtracklayer
r-runit
r-scales
r-sesame
r-shiny
r-shinyjs
r-sva
r-watermelon
r-wordcloud
r-xml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('720b927f27713b7a16d703a1c77c1cb481f2c263b625a064dd004fed57fded6c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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