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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=Rvisdiff
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive Graphs for Differential Expression"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only OR GPL-3.0-only')
depends=(
r-edger
)
optdepends=(
r-airway
r-biocmanager
r-biocstyle
r-deseq2
r-knitr
r-limma
r-matrixtests
r-rmarkdown
r-summarizedexperiment
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4ba986d27d98c2d83005b9e6d69c0f32')
b2sums=('d639607c1d76fb529f4788876577dfbb396bc3d12402079a4341a986e6ba9edd611c9655fe8bcd4d23ad87a0f7d3446eae8270b7907fcd0850a7110d9c4991d1')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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