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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scanMiRApp
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="scanMiR shiny application"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-annotationdbi
r-annotationfilter
r-annotationhub
r-biocparallel
r-biostrings
r-data.table
r-digest
r-dt
r-ensembldb
r-fst
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-htmlwidgets
r-iranges
r-plotly
r-rintrojs
r-rtracklayer
r-s4vectors
r-scanmir
r-scanmirdata
r-shiny
r-shinycssloaders
r-shinydashboard
r-shinyjqui
r-txdbmaker
r-waiter
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.mmusculus.ucsc.mm39
r-bsgenome.rnorvegicus.ucsc.rn6
r-knitr
r-rmarkdown
r-shinytest
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('ffd8892c002d452584bbf670cd293e25')
b2sums=('07e30009918f36cc2d11680aa77f057f2baf2cbeaa6b31b4dcdcc7249764cd1cfd13e72aa0160a7ab24706e11c19237f5eb119392e82a6d1b20c936e7af6af9e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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