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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=sccomp
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-dplyr
r-forcats
r-ggplot2
r-ggrepel
r-glue
r-lifecycle
r-magrittr
r-patchwork
r-purrr
r-rcpp
r-rcppparallel
r-readr
r-rlang
r-rstan
r-rstantools
r-scales
r-seuratobject
r-singlecellexperiment
r-stringr
r-tibble
r-tidyr
r-tidyselect
)
makedepends=(
r-bh
r-rcppeigen
r-stanheaders
)
checkdepends=(
r-testthat
r-tidyseurat
)
optdepends=(
r-biocstyle
r-knitr
r-loo
r-markdown
r-prettydoc
r-testthat
r-tidyseurat
r-tidysinglecellexperiment
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('38fa3fb4d650ac6866ba2586deaf34e6')
b2sums=('0d1374553310470136e97f037c7ac9d4d28768be43409ce7f76e37eba5e7851f6248cf71375078334daf77fa9d7b8249be93d6ff34e08d8bc54430139212903d')
build() {
mkdir build
# compilation needs a lot of memory
MAKEFLAGS+=" -j1"
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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