blob: bb1322515d5cc7b8f01ebc4453c0a8e4ca66d6f1 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scDesign3
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-coop
r-dplyr
r-gamlss
r-gamlss.dist
r-ggplot2
r-irlba
r-matrixstats
r-mclust
r-mvtnorm
r-pbmcapply
r-rvinecopulib
r-singlecellexperiment
r-sparsemvn
r-summarizedexperiment
r-tibble
r-umap
r-viridis
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-igraph
r-knitr
r-mvnfast
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7a2051e5737f93a928cfe0f983c7ba0f')
b2sums=('94f437a75340debd0de9717c40174877ab9726d1a984d948ecafb8c76c264c80436e20decc2332563579cd9e45590388dc0d9e4dcfded166767d8270c1f5ddf3')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|