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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scFeatures
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Multi-view representations of single-cell and spatial data for disease outcome prediction"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-ape
r-aucell
r-biocparallel
r-cli
r-delayedarray
r-delayedmatrixstats
r-dplyr
r-dt
r-ensdb.hsapiens.v79
r-ensdb.mmusculus.v79
r-ensembldb
r-glue
r-gsva
r-gtools
r-matrixgenerics
r-msigdbr
r-proxyc
r-reshape2
r-rmarkdown
r-seurat
r-singlecellsignalr
r-spatstat.explore
r-spatstat.geom
r-tidyr
)
optdepends=(
r-biocstyle
r-classifyr
r-clusterprofiler
r-knitr
r-org.hs.eg.db
r-s4vectors
r-survminer
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e755e535da381f93a8530f45a951369d')
b2sums=('9a014ead0910adc1c85fdfda060777aa0fa44973300aa375a6b5687b527fdb0d4aedcde504458fe993ac57c3f7646e9df05346489c86c2c55f88c5b148399bc5')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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