blob: f603056ea8443bf64cf4212ffb0ed0bb8aa7e3bf (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
|
# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scran
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=1.32.0
pkgrel=1
pkgdesc='Methods for Single-Cell RNA-Seq Data Analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-beachmat
r-bh
r-biocgenerics
r-biocparallel
r-biocsingular
r-bluster
r-delayedarray
r-delayedmatrixstats
r-dqrng
r-edger
r-igraph
r-limma
r-metapod
r-rcpp
r-s4vectors
r-scuttle
r-singlecellexperiment
r-statmod
r-summarizedexperiment
)
optdepends=(
r-biobase
r-biocstyle
r-deseq2
r-dynamictreecut
r-hdf5array
r-knitr
r-monocle
r-pheatmap
r-residualmatrix
r-rmarkdown
r-scaledmatrix
r-scater
r-scrnaseq
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4129cc3487c32e184edfa75133de244c5b96661d24eb7211ecdca4b209163e68')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|