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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scRepertoire
_pkgver=2.2.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A toolkit for single-cell immune receptor profiling"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-cubature
r-dplyr
r-evmix
r-ggalluvial
r-ggdendro
r-ggplot2
r-ggraph
r-hash
r-igraph
r-inext
r-plyr
r-quantreg
r-rcpp
r-reshape2
r-rjson
r-rlang
r-s4vectors
r-seuratobject
r-singlecellexperiment
r-stringdist
r-stringr
r-summarizedexperiment
r-tidygraph
r-truncdist
r-vgam
r-lifecycle
r-purrr
r-assertthat
)
optdepends=(
r-biocmanager
r-biocstyle
r-circlize
r-knitr
r-rmarkdown
r-scales
r-scater
r-seurat
r-spelling
r-testthat
r-vdiffr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6499720e8ba9e80e3472a9b575ffbabd')
b2sums=('98eea08d458ebe8b5ca4fde1f830e4c53f9b9f1ce5a66ffb3c05eab6f16dc9e154c63285f38aa3ac8902f721d191dffc0a71f4ab2f5df745f022e524d80135e2')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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