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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scRNAseq
_pkgver=2.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Collection of Public Single-Cell RNA-Seq Datasets"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('CC0-1.0')
depends=(
r-alabaster.base
r-alabaster.matrix
r-alabaster.sce
r-annotationdbi
r-annotationhub
r-biocgenerics
r-dbi
r-delayedarray
r-ensembldb
r-experimenthub
r-genomicfeatures
r-genomicranges
r-gypsum
r-jsonlite
r-rsqlite
r-s4vectors
r-singlecellexperiment
r-sparsearray
r-summarizedexperiment
)
optdepends=(
r-biocmanager
r-biocstyle
r-jsonvalidate
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('80c2b37a7e0ca773dfbcd4bae66cff6d')
b2sums=('1b90b24c34d59ac24034c90e6c387123ba4d39e3e4f67d6953e106356cf22d186471ce6988a4359a97409a9501e69843407611a51efb746d24954a17831007a4')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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