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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scTensor
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=2.14.0
pkgrel=1
pkgdesc='Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-abind
r-annotationdbi
r-annotationhub
r-biocmanager
r-biocstyle
r-category
r-cctensor
r-checkmate
r-crayon
r-dose
r-ggplot2
r-gostats
r-heatmaply
r-igraph
r-knitr
r-meshdbi
r-meshr
r-nntensor
r-outliers
r-plotly
r-plotrix
r-reactome.db
r-reactomepa
r-rmarkdown
r-rsqlite
r-rtensor
r-s4vectors
r-schex
r-singlecellexperiment
r-summarizedexperiment
r-tagcloud
r-visnetwork
)
optdepends=(
r-homo.sapiens
r-lrbasedbi
r-sctgif
r-seurat
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('21c43400c29df1f628d5f2e882b9e3700e6596ad5fc06d24767f98ce85f58ae8')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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