blob: f58142dab78b00eae46eb93d2a491388a6731ff2 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=seqCAT
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='High Throughput Sequencing Cell Authentication Toolkit'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-dplyr
r-genomeinfodb
r-genomicranges
r-ggplot2
r-iranges
r-rlang
r-rtracklayer
r-s4vectors
r-scales
r-summarizedexperiment
r-tidyr
r-variantannotation
)
optdepends=(
r-biocmanager
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a1d7a3a0f04beba7d86802998159940a4ab5835fb5fec4a48466d0fe1d2808cd')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENCE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|