PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=SeqSQC
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A bioconductor package for sample quality check with next generation sequencing data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-e1071
  r-experimenthub
  r-gdsfmt
  r-genomicranges
  r-ggally
  r-ggplot2
  r-iranges
  r-plotly
  r-rcolorbrewer
  r-reshape2
  r-rmarkdown
  r-s4vectors
  r-snprelate
)
optdepends=(
  r-biocstyle
  r-knitr
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d3038a849a70cc2625cf2931230e0a2a')
b2sums=('93f7fa78d4f0a4a023fdda2642a62c180826af4a8a4017dfcb3cf98cd50cf951f3ad75412b58cccf8d1b6d2df092ddd40eaabe8f0336c3517b135e108d84b69e')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}