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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=signeR
_pkgver=2.8.0
pkgname=r-${_pkgname,,}
pkgver=2.8.0
pkgrel=1
pkgdesc='Empirical Bayesian approach to mutational signature discovery'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
gcc
r
r-ada
r-biocfilecache
r-biocgenerics
r-biostrings
r-bsgenome
r-bsplus
r-clue
r-cowplot
r-dplyr
r-dt
r-e1071
r-future
r-future.apply
r-genomeinfodb
r-genomicranges
r-ggplot2
r-ggpubr
r-glmnet
r-iranges
r-kknn
r-listenv
r-magrittr
r-maxstat
r-nloptr
r-nmf
r-pheatmap
r-pmcmrplus
r-ppclust
r-proc
r-proxy
r-pvclust
r-randomforest
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-readr
r-reshape2
r-rtracklayer
r-scales
r-shiny
r-shinycssloaders
r-shinydashboard
r-shinywidgets
r-survivalanalysis
r-survminer
r-tibble
r-tidyr
r-variantannotation
r-vgam
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('9a2147cfc59d704d179eb5879c0b9ea74f8f13c0cececbafee87990aefd7b9ff')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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